Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4awp 99A Heat shock protein HSP 90-alpha

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4awp 99AHeat shock protein HSP 90-alpha / 1.294
4awo 99BHeat shock protein HSP 90-alpha / 1.129
4awq 592Heat shock protein HSP 90-alpha / 1.006
3d0b SNXHeat shock protein HSP 90-alpha / 0.674
3opd HIEHeat shock protein 83 / 0.673
3q5k D1UHeat shock protein 83-1 / 0.650