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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4aub NAP L-glyceraldehyde 3-phosphate reductase 1.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4aub NAPL-glyceraldehyde 3-phosphate reductase 1.1.1 1.293
2r9r NAPVoltage-gated potassium channel subunit beta-2 / 0.872
4jta NAPVoltage-gated potassium channel subunit beta-2 / 0.860
1lqa NDPProtein tas / 0.814
3lnm NAPVoltage-gated potassium channel subunit beta-2 / 0.811
2hej NDPAldo-keto reductase family 1 member C21 1.1.1 0.751
3wg6 NDPNADPH-dependent conjugated polyketone reductase C1 / 0.750
4h8n NDPNADPH-dependent conjugated polyketone reductase C2 / 0.746
3lut NAPVoltage-gated potassium channel subunit beta-2 / 0.744
4jtc NAPVoltage-gated potassium channel subunit beta-2 / 0.734
4jtd NAPVoltage-gated potassium channel subunit beta-2 / 0.726
1a80 NDP2,5-diketo-D-gluconic acid reductase A 1.1.1.346 0.724
4pmj NAPPutative oxidoreductase / 0.722
3ln3 NADAldo-keto reductase family 1 member C13 / 0.721
2p5n NDPAldo-keto reductase family 1 member C21 1.1.1 0.719
4ijr NDPD-arabinose dehydrogenase [NAD(P)+] heavy chain 1.1.1.117 0.715
5c7h NDPPutative oxidoreductase / 0.715
1ye6 NAPNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.714
1qrq NDPVoltage-gated potassium channel subunit beta-2 / 0.708
2bp1 NDPAflatoxin B1 aldehyde reductase member 2 / 0.708
1k8c NAPNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.702
3caq NDP3-oxo-5-beta-steroid 4-dehydrogenase / 0.701
1lwi NAP3-alpha-hydroxysteroid dehydrogenase 1.1.1.50 0.700
4xzm NAPAldo-keto reductase family 1 member B10 1.1.1 0.696
1gve NAPAflatoxin B1 aldehyde reductase member 3 1 0.694
2fvl NAPAldo-keto reductase family 1 member C4 1.1.1.225 0.694
2hdj NDPAldo-keto reductase family 1 member C2 / 0.694
1vp5 NAPOxidoreductase, aldo/keto reductase family / 0.692
2clp NDPAflatoxin B1 aldehyde reductase member 3 / 0.690
4jtq NAPAldo-keto reductase family 1 member C2 / 0.686
2c91 NAPAflatoxin B1 aldehyde reductase member 2 / 0.679
2he5 NDPAldo-keto reductase family 1 member C21 1.1.1 0.674
4g5d NDPProstaglandin F synthase 1.1.1.188 0.671
4xzn NAPAldo-keto reductase family 1 member B10 1.1.1 0.671
1hqt NAPAlcohol dehydrogenase [NADP(+)] 1.1.1.2 0.669
3bv7 NAP3-oxo-5-beta-steroid 4-dehydrogenase / 0.668
1mi3 NADNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.667
1ah4 NAPAldose reductase 1.1.1.21 0.665
1z8a NAPAldose reductase 1.1.1.21 0.665
1m9h NAD2,5-diketo-D-gluconic acid reductase A 1.1.1.346 0.660
1q5m NDPProstaglandin-E(2) 9-reductase 1.1.1.189 0.660
1pz1 NAPGeneral stress protein 69 / 0.655
2bgs NDPAldose reductase 1.1.1.21 0.654
4guu FA9Lysine-specific histone demethylase 1B 1 0.654
1og6 NAPOxidoreductase YdhF 1 0.652
2acq NAPAldose reductase 1.1.1.21 0.651
3cgb COACoenzyme A disulfide reductase / 0.651
4xo7 NAPAldo-keto reductase family 1 member C2 / 0.651