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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4amj CVD Beta-1 adrenergic receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4amj CVDBeta-1 adrenergic receptor / 1.161
4bvn P32Beta-1 adrenergic receptor / 0.928
2ycw CAUBeta-1 adrenergic receptor / 0.919
2rh1 CAUBeta-2 adrenergic receptor / 0.919
5d5b CAUBeta-2 adrenergic receptor / 0.907
5jqh CAUBeta-2 adrenergic receptor / 0.903
5a8e XTKBeta-1 adrenergic receptor / 0.897
5d6l CAUBeta-2 adrenergic receptor / 0.893
2ycy P32Beta-1 adrenergic receptor / 0.868
2vt4 P32Beta-1 adrenergic receptor / 0.846
3ny9 JSZBeta-2 adrenergic receptor / 0.836
5d5a CAUBeta-2 adrenergic receptor / 0.829
4gbr CAUBeta-2 adrenergic receptor / 0.814
2ycz I32Beta-1 adrenergic receptor / 0.807
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
3ny8 JRZBeta-2 adrenergic receptor / 0.741
3nya JTZBeta-2 adrenergic receptor / 0.728
4ldl XQCBeta-2 adrenergic receptor / 0.720
5f8u P32Beta-1 adrenergic receptor / 0.711
4ami G90Beta-1 adrenergic receptor / 0.682
4lde P0GBeta-2 adrenergic receptor / 0.668
3p0g P0GBeta-2 adrenergic receptor / 0.662
4e5f 0N7Polymerase acidic protein / 0.660
3d4s TIMBeta-2 adrenergic receptor / 0.658
2v0i UD1Bifunctional protein GlmU / 0.650