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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4akn S5B Bromodomain-containing protein 2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4akn S5BBromodomain-containing protein 2 / 1.067
3zyu 1GHBromodomain-containing protein 4 / 0.862
4a9n A9NBromodomain-containing protein 2 / 0.836
4j0s 1H3Bromodomain-containing protein 4 / 0.764
4gpj 0Q1Bromodomain-containing protein 4 / 0.763
4a9o A9OBromodomain-containing protein 2 / 0.724
4a9m P9MBromodomain-containing protein 2 / 0.723
4bw4 9B6Bromodomain-containing protein 4 / 0.718
4bjx 73BBromodomain-containing protein 4 / 0.707
2yel WSHBromodomain-containing protein 4 / 0.695
4j0r 1H2Bromodomain-containing protein 4 / 0.684
2ydw WSHBromodomain-containing protein 2 / 0.677
4alg 1GHBromodomain-containing protein 2 / 0.664
4a9l P9LBromodomain-containing protein 4 / 0.663
4bw3 9BMBromodomain-containing protein 4 / 0.662
4bw1 S5BBromodomain-containing protein 4 / 0.657
4a9h TVPBromodomain-containing protein 2 / 0.656