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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ajo 88N L-lactate dehydrogenase A chain 1.1.1.27

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ajo 88NL-lactate dehydrogenase A chain 1.1.1.27 1.502
4ajp 88NL-lactate dehydrogenase A chain 1.1.1.27 1.409
4ajn 88VL-lactate dehydrogenase A chain 1.1.1.27 1.290
4ajj 88RL-lactate dehydrogenase A chain 1.1.1.27 0.995
4i9h 1E4L-lactate dehydrogenase A chain 1.1.1.27 0.714
2y6p CTP3-deoxy-manno-octulosonate cytidylyltransferase 2.7.7.38 0.655
1ra3 MTXDihydrofolate reductase 1.5.1.3 0.650