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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ag9 COA Glucosamine 6-phosphate N-acetyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ag9 COAGlucosamine 6-phosphate N-acetyltransferase / 1.026
2vxk COAGlucosamine 6-phosphate acetyltransferase, putative / 0.762
3gya COAGCN5-related N-acetyltransferase / 0.731
3dr8 ACOL-methionine sulfoximine/L-methionine sulfone acetyltransferase / 0.703
3gy9 COAGCN5-related N-acetyltransferase / 0.703
2ge3 ACOProbable acetyltransferase / 0.691
5kf8 ACOPredicted acetyltransferase / 0.691
2q4v ACODiamine acetyltransferase 2 2.3.1.57 0.690
3zj0 ACOPutative acetyltransferase OgpAT / 0.674
4r3k COAN-alpha-acetyltransferase 2.3.1 0.674
4jwp ACOGCN5-related N-acetyltransferase / 0.672
5kgj ACOPredicted acetyltransferase / 0.669
1bob ACOHistone acetyltransferase type B catalytic subunit / 0.668
3r1k COAN-acetyltransferase Eis / 0.662
1kuy COTSerotonin N-acetyltransferase / 0.658
5kf9 ACOPredicted acetyltransferase / 0.658
5kgh ACOPredicted acetyltransferase / 0.658
1qsr ACOHAT A1 / 0.654
5kf2 ACOPredicted acetyltransferase / 0.654
1m1d LYXHAT A1 / 0.653
4jxr ACOAcetyltransferase / 0.652
1qsn COAHAT A1 / 0.651
2bsw CAOProbable acetyltransferase / 0.651
2jdc CAOProbable acetyltransferase / 0.651
2zpa ACOtRNA(Met) cytidine acetyltransferase TmcA / 0.650
4h6u ACOAlpha-tubulin N-acetyltransferase 1 / 0.650