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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4a95 NHW Glycylpeptide N-tetradecanoyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4a95 NHWGlycylpeptide N-tetradecanoyltransferase / 1.778
4bbh NHWGlycylpeptide N-tetradecanoyltransferase / 1.721
4c68 NHWGlycylpeptide N-tetradecanoyltransferase / 1.706
2yne NHWGlycylpeptide N-tetradecanoyltransferase / 1.699
4b13 NHWGlycylpeptide N-tetradecanoyltransferase / 1.698
4b12 NHWGlycylpeptide N-tetradecanoyltransferase / 1.685
4b14 NHWGlycylpeptide N-tetradecanoyltransferase / 1.674
2ync YNCGlycylpeptide N-tetradecanoyltransferase / 1.657
4b10 NHWGlycylpeptide N-tetradecanoyltransferase / 1.649
4c2y MYAGlycylpeptide N-tetradecanoyltransferase 1 / 1.587
4cgp MYAGlycylpeptide N-tetradecanoyltransferase / 1.577
4a30 MYAGlycylpeptide N-tetradecanoyltransferase / 1.549
2wsa MYAGlycylpeptide N-tetradecanoyltransferase / 1.531
2wuu NHWGlycylpeptide N-tetradecanoyltransferase / 1.531
5ag5 MYAGlycylpeptide N-tetradecanoyltransferase / 1.523
4ucn MYAGlycylpeptide N-tetradecanoyltransferase / 1.512
4a2z MYAGlycylpeptide N-tetradecanoyltransferase / 1.510
4a31 MYAGlycylpeptide N-tetradecanoyltransferase / 1.508
5a28 MYAGlycylpeptide N-tetradecanoyltransferase / 1.503
4b11 NHWGlycylpeptide N-tetradecanoyltransferase / 1.493
4c2z MYAGlycylpeptide N-tetradecanoyltransferase 1 / 1.488
5ag6 MYAGlycylpeptide N-tetradecanoyltransferase / 1.484
5ag4 MYAGlycylpeptide N-tetradecanoyltransferase / 1.478
5a27 MYAGlycylpeptide N-tetradecanoyltransferase / 1.477
4c2x NHWGlycylpeptide N-tetradecanoyltransferase 2 / 1.456
5ag7 MYAGlycylpeptide N-tetradecanoyltransferase / 1.424
4a33 MYAGlycylpeptide N-tetradecanoyltransferase / 1.419
4a32 MYAGlycylpeptide N-tetradecanoyltransferase / 1.253
4cax MYAGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.059
2nmt NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.031
1iid NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.019
4qbj NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 0.982
4cav MYAGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 0.858
2cns ACORibosomal-protein-alanine acetyltransferase / 0.688
3zbt FADFerredoxin--NADP reductase 1.18.1.2 0.660
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 0.659
2w6c BM4Acetylcholinesterase 3.1.1.7 0.659
5kf8 COAPredicted acetyltransferase / 0.658