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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4a83 DXC Major pollen allergen Bet v 1-A

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4a83 DXCMajor pollen allergen Bet v 1-A / 1.091
4a81 DXCMajor pollen allergen Bet v 1-A / 0.928
3gki CLRNiemann-Pick C1 protein / 0.682
3em0 CHDFatty acid-binding protein 6, ileal (gastrotropin) / 0.677
4c49 HCYCorticosteroid-binding globulin / 0.659
1ot7 CHCBile acid receptor / 0.658