Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4a81 DXC Major pollen allergen Bet v 1-A

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4a81 DXCMajor pollen allergen Bet v 1-A / 1.153
4a83 DXCMajor pollen allergen Bet v 1-A / 0.928
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.744
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.744
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.744
2puc GUNHTH-type transcriptional repressor PurR / 0.744
4e5l DBHPolymerase acidic protein / 0.744
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.744
3gkj HC3Niemann-Pick C1 protein / 0.700
2azz TCHPhospholipase A2, major isoenzyme 3.1.1.4 0.669
1tw4 CHDFatty acid-binding protein, liver / 0.666
2hru ADPPhosphoribosylformylglycinamidine synthase subunit PurL / 0.666
3l0l HC3Nuclear receptor ROR-gamma / 0.661
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4e5f 0N7Polymerase acidic protein / 0.660
4hqv QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3em0 CHDFatty acid-binding protein 6, ileal (gastrotropin) / 0.658
3gyt DL4Nuclear hormone receptor of the steroid/thyroid hormone receptors superfamily / 0.651
1a27 ESTEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.650
2qo5 CHDFatty acid-binding protein 10-A, liver basic / 0.650
4j26 ESTEstrogen receptor beta / 0.650