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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4a6b QG8 Gag-Pol polyprotein 3.4.23.16

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4a6b QG8Gag-Pol polyprotein 3.4.23.16 1.397
4a6c QG9Gag-Pol polyprotein 3.4.23.16 1.137
4a4q UX9Pol protein / 0.835
2uxz HI1Gag-Pol polyprotein 3.4.23.16 0.795
3zps EQMGag-Pol polyprotein 3.4.23.16 0.791
2xyf G40Gag-Pol polyprotein / 0.748
2fxe DR7Gag-Pol polyprotein 3.4.23.16 0.733
3gga GGWGag-Pol polyprotein / 0.727
2wl0 5AHGag-Pol polyprotein / 0.726
1mtr PI6Gag-Pol polyprotein 3.4.23.16 0.718
3zpu M8BGag-Pol polyprotein 3.4.23.16 0.717
3eky DR7Gag-Pol polyprotein 3.4.23.16 0.705
3tof 076Gag-Pol polyprotein 2.7.7.49 0.704
3kf0 3TLGag-Pol polyprotein / 0.691
2xye CXGGag-Pol polyprotein / 0.690
3nxe 2NCProtease / 0.685
2cem 2AHPol protein / 0.682
2uy0 HV1Gag-Pol polyprotein 3.4.23.16 0.681
2cej 1AHPol protein / 0.679
1odw 0E8Gag-Pol polyprotein 3.4.23.16 0.676
3em4 DR7Gag-Pol polyprotein 3.4.23.16 0.674
1hih C20Gag-Pol polyprotein / 0.673
2f3k RO1Protease / 0.673
1ebz BECGag-Pol polyprotein 3.4.23.16 0.672
2hb3 GRLProtease / 0.671
2f81 017Gag-Pol polyprotein 3.4.23.16 0.670
2az9 3TLGag-Pol polyprotein 3.4.23.16 0.669
3ecg 065Gag-Pol polyprotein 3.4.23.47 0.666
3kfs 3TLGag-Pol polyprotein / 0.666
3toh 079Gag-Pol polyprotein 2.7.7.49 0.666
4hdb G52Gag-Pol polyprotein 3.4.23.16 0.666
1hvs A77Gag-Pol polyprotein / 0.665
2i4v DJRV-1 protease / 0.664
2qi4 MZ6Gag-Pol polyprotein / 0.660
1ec2 BEJGag-Pol polyprotein 3.4.23.16 0.659
3cyw 017Gag-Pol polyprotein 3.4.23.16 0.659
3o9g F53Gag-Pol polyprotein / 0.659
2pk5 075Protease / 0.657
3i6o GR6Gag-Pol polyprotein 3.4.23.16 0.657
1a8k 0Q4Gag-Pol polyprotein 3.4.23.16 0.656
1b11 3TLPol polyprotein / 0.656
3bxs DRSGag-Pol polyprotein 3.4.23.16 0.656
3tog 079Gag-Pol polyprotein 2.7.7.49 0.656
1t7i 017Gag-Pol polyprotein 3.4.23.16 0.654
1fgc 2NCGag-Pol polyprotein 3.4.23.16 0.652
2fdd 385Pol protein / 0.652
3d20 017Gag-Pol polyprotein 3.4.23.16 0.651
1z1h HBBGag-Pol polyprotein 3.4.23.16 0.650
3ok9 G52Gag-Pol polyprotein 3.4.23.16 0.650