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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4a5s N7F Dipeptidyl peptidase 4

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4a5s N7FDipeptidyl peptidase 4 / 1.198
4dtc D5CDipeptidyl peptidase 4 / 0.773
2rgu 356Dipeptidyl peptidase 4 / 0.753
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
3g0c RUFDipeptidyl peptidase 4 / 0.721
2aj8 SC3Dipeptidyl peptidase 4 / 0.718
4ffw 715Dipeptidyl peptidase 4 / 0.714
3g0d XIHDipeptidyl peptidase 4 / 0.707
3g0g RUMDipeptidyl peptidase 4 / 0.703
3ccb B2YDipeptidyl peptidase 4 / 0.700
3opm LUIDipeptidyl peptidase 4 / 0.693
3g0b T22Dipeptidyl peptidase 4 / 0.670
3vjl W94Dipeptidyl peptidase 4 / 0.666
3ccc 7ACDipeptidyl peptidase 4 / 0.662
3q44 D50M1 family aminopeptidase 3.4.11 0.661
4e5f 0N7Polymerase acidic protein / 0.660