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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4a32 2CD Glycylpeptide N-tetradecanoyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4a32 2CDGlycylpeptide N-tetradecanoyltransferase / 0.973
4cax 646Glycylpeptide N-tetradecanoyltransferase 2.3.1.97 0.730
4a2z VIQGlycylpeptide N-tetradecanoyltransferase / 0.713
2wsa 646Glycylpeptide N-tetradecanoyltransferase / 0.695
4c2z 646Glycylpeptide N-tetradecanoyltransferase 1 / 0.662
2iu0 203Bifunctional purine biosynthesis protein PURH 2.1.2.3 0.652