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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4a2b AGS Cell division protein FtsA

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4a2b AGSCell division protein FtsA / 1.123
1e4g ATPCell division protein FtsA / 0.878
4a2a ATPCell division protein FtsA / 0.814
4a62 ANPPlasmid segregation protein ParM / 0.800
2zgz GNPPlasmid segregation protein ParM / 0.753
3a5m ATPMajor actin / 0.751
4a61 ANPPlasmid segregation protein ParM / 0.740
4eht ADP2-hydroxyisocaproyl-CoA dehydratase activator / 0.725
4ehu ANP2-hydroxyisocaproyl-CoA dehydratase activator / 0.717
2v51 ATPActin, alpha skeletal muscle / 0.708
3vpb ADPGlutamate--LysW ligase ArgX 6.3.2 0.698
1kxp ATPActin, alpha skeletal muscle / 0.694
1yxq ATPActin, alpha skeletal muscle / 0.679
4rwt ANPActin-5C / 0.675
3ule ATPActin-related protein 2 / 0.670
4pkh ADPActin, alpha skeletal muscle / 0.669
2ydo ADNAdenosine receptor A2a / 0.665
2zgy GDPPlasmid segregation protein ParM / 0.663
1nlv ATPMajor actin / 0.661
3a5o ATPMajor actin / 0.661
1eqy ATPActin, alpha skeletal muscle / 0.660
1wua ATPActin, alpha skeletal muscle / 0.660
4b1v ATPActin, alpha skeletal muscle / 0.660
2fsn ADPArchaeal actin homolog / 0.659
2e2q ADPATP-dependent hexokinase / 0.658
5eoy ADPType 4 fimbrial biogenesis protein PilM / 0.657
1ijj ATPActin, alpha skeletal muscle / 0.655
1qz5 ATPActin, alpha skeletal muscle / 0.652