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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4a2a ATP Cell division protein FtsA

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4a2a ATPCell division protein FtsA / 1.045
4a2b AGSCell division protein FtsA / 0.814
1e4g ATPCell division protein FtsA / 0.723
2zgz GNPPlasmid segregation protein ParM / 0.714
1lot ATPActin, alpha skeletal muscle / 0.696
1yxq ATPActin, alpha skeletal muscle / 0.683
4pl8 ATPActin, alpha skeletal muscle / 0.664
1nlv ATPMajor actin / 0.659
4b1v ATPActin, alpha skeletal muscle / 0.659
4a61 ANPPlasmid segregation protein ParM / 0.658
1nmd ATPMajor actin / 0.657
2fsn ADPArchaeal actin homolog / 0.656
2v51 ATPActin, alpha skeletal muscle / 0.653
3a5m ATPMajor actin / 0.653
3a5o ATPMajor actin / 0.651