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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4a1o AMZ Bifunctional purine biosynthesis protein PurH 2.1.2.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4a1o AMZBifunctional purine biosynthesis protein PurH 2.1.2.3 1.129
2b1i 93ABifunctional purine biosynthesis protein PURH 2.1.2.3 0.712
4ycp FMNtRNA-dihydrouridine(16) synthase / 0.682
4xd2 NAIAlcohol dehydrogenase E chain 1.1.1.1 0.675
1c0k FADD-amino-acid oxidase 1.4.3.3 0.662
2bp1 NDPAflatoxin B1 aldehyde reductase member 2 / 0.662
1axe NADAlcohol dehydrogenase E chain 1.1.1.1 0.661
1lvg 5GPGuanylate kinase 2.7.4.8 0.661
2oxi NADAlcohol dehydrogenase E chain 1.1.1.1 0.660
5kjf NAJAlcohol dehydrogenase E chain 1.1.1.1 0.659
3adp NAILambda-crystallin 1.1.1.45 0.658
5kjc NAJAlcohol dehydrogenase E chain 1.1.1.1 0.658
5kje NAJAlcohol dehydrogenase E chain 1.1.1.1 0.658
4qec NAPElxO / 0.657
3iel U5PRibonuclease TTHA0252 3.1 0.653
3two NDPMannitol dehydrogenase / 0.653
1m76 NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.650
2wu1 FGSGlucosamine-6-phosphate deaminase 3.5.99.6 0.650