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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3zzh NLG Protein ARG5,6, mitochondrial 2.7.2.8

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3zzh NLGProtein ARG5,6, mitochondrial 2.7.2.8 1.021
3zzf NLGProtein ARG5,6, mitochondrial 2.7.2.8 0.962
2rd5 NLGAcetylglutamate kinase, chloroplastic 2.7.2.8 0.757
3sxj SAMPutative methyltransferase / 0.684
3rib SAHN-lysine methyltransferase SMYD2 / 0.670
2d0k FOLDihydrofolate reductase 1.5.1.3 0.668
2ojt UBAGlutamate receptor ionotropic, kainate 1 / 0.668
4ax8 SAMO-antigen chain terminator bifunctional methyltransferase/kinase WbdD / 0.668
1toi HCIAspartate aminotransferase 2.6.1.1 0.660
4ie5 MD6Alpha-ketoglutarate-dependent dioxygenase FTO / 0.659
4bl5 GFBGDP-L-fucose synthase 1.1.1.271 0.657
5ccc DDFDihydrofolate reductase 1.5.1.3 0.656
3h06 VBPGlutamate receptor 2 / 0.650