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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3zzf NLG Protein ARG5,6, mitochondrial 2.7.2.8

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3zzf NLGProtein ARG5,6, mitochondrial 2.7.2.8 0.972
3zzh NLGProtein ARG5,6, mitochondrial 2.7.2.8 0.962
1fro GSBLactoylglutathione lyase 4.4.1.5 0.686
2rd5 NLGAcetylglutamate kinase, chloroplastic 2.7.2.8 0.667
1dyi FOLDihydrofolate reductase 1.5.1.3 0.660
3rib SAHN-lysine methyltransferase SMYD2 / 0.656
1rg7 MTXDihydrofolate reductase 1.5.1.3 0.653
1bh5 GTXLactoylglutathione lyase 4.4.1.5 0.652
2zza FOLDihydrofolate reductase / 0.651
1rf7 DHFDihydrofolate reductase 1.5.1.3 0.650