Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3zyu 1GH Bromodomain-containing protein 4

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3zyu 1GHBromodomain-containing protein 4 / 1.011
4alg 1GHBromodomain-containing protein 2 / 0.917
4akn S5BBromodomain-containing protein 2 / 0.862
4bw1 S5BBromodomain-containing protein 4 / 0.837
4bw4 9B6Bromodomain-containing protein 4 / 0.823
4a9n A9NBromodomain-containing protein 2 / 0.787
4j0s 1H3Bromodomain-containing protein 4 / 0.785
4a9m P9MBromodomain-containing protein 2 / 0.774
4gpj 0Q1Bromodomain-containing protein 4 / 0.774
4bw3 9BMBromodomain-containing protein 4 / 0.750
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4e5l DBHPolymerase acidic protein / 0.744
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.744
4c67 L5SBromodomain-containing protein 4 / 0.701
2yel WSHBromodomain-containing protein 4 / 0.679
4a9o A9OBromodomain-containing protein 2 / 0.671
4bjx 73BBromodomain-containing protein 4 / 0.670
1ozq PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hqv QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4alh A9PBromodomain-containing protein 2 / 0.655
2ydw WSHBromodomain-containing protein 2 / 0.651