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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3zy3 GDP GDP-fucose protein O-fucosyltransferase 1 2.4.1.221

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3zy3 GDPGDP-fucose protein O-fucosyltransferase 1 2.4.1.221 1.106
3zy6 GFBGDP-fucose protein O-fucosyltransferase 1 2.4.1.221 0.953
3zy5 GFBGDP-fucose protein O-fucosyltransferase 1 2.4.1.221 0.945
3m0e ATPTranscriptional regulator (NtrC family) / 0.700
3pzr NAPAspartate-semialdehyde dehydrogenase 1 / 0.669
3rv3 ADPBiotin carboxylase 6.3.4.14 0.665
3se5 ANPAdenosine monophosphate-protein transferase NmFic 2.7.7.n1 0.664
5bnt NAPAspartate-semialdehyde dehydrogenase 1.2.1.11 0.662
3p74 FMNPentaerythritol tetranitrate reductase / 0.654
4gdy 0X1Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.652
4bri UNPEctonucleoside triphosphate diphosphohydrolase I / 0.650