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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3zxt ACP Death-associated protein kinase 1 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3zxt ACPDeath-associated protein kinase 1 2.7.11.1 0.912
2w4j ADPDeath-associated protein kinase 1 2.7.11.1 0.699
1ig1 ANPDeath-associated protein kinase 1 2.7.11.1 0.694
2xuu ADPDeath-associated protein kinase 1 2.7.11.1 0.677
3gu5 ANPDeath-associated protein kinase 1 2.7.11.1 0.675
3wo0 ADPAlanine--anticapsin ligase / 0.675
4krc AGSCyclin-dependent protein kinase PHO85 2.7.11.22 0.675
4fi1 ATPCasein kinase II subunit alpha 2.7.11.1 0.673
4mwh ATPCasein kinase II subunit alpha 2.7.11.1 0.673
5dt4 ATPAurora kinase A 2.7.11.1 0.672
3b2t M33Fibroblast growth factor receptor 2 / 0.670
4iaz ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.670
4nm5 ADPGlycogen synthase kinase-3 beta 2.7.11.26 0.670
1zar ADPRIO-type serine/threonine-protein kinase Rio2 2.7.11.1 0.668
4iaf ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.666
1jkl ANPDeath-associated protein kinase 1 2.7.11.1 0.663
3cok ANPSerine/threonine-protein kinase PLK4 2.7.11.21 0.663
3gu7 ADPDeath-associated protein kinase 1 2.7.11.1 0.663
1daw ANPCasein kinase II subunit alpha 2.7.11.1 0.662
3kn5 ANPRibosomal protein S6 kinase alpha-5 2.7.11.1 0.661
3gu4 ANPDeath-associated protein kinase 1 2.7.11.1 0.660
3ung ADPCRISPR system Cmr subunit Cmr2 / 0.660
4ix5 ANPUncharacterized protein / 0.660
2w4k ADPDeath-associated protein kinase 1 2.7.11.1 0.659
5ce3 ADPProtein kinase YopO / 0.658
2pvr ANPCasein kinase II subunit alpha 2.7.11.1 0.656
2b9i ADPMitogen-activated protein kinase FUS3 2.7.11.24 0.654
3f5u ANPDeath-associated protein kinase 1 2.7.11.1 0.653
4cki ADNProto-oncogene tyrosine-protein kinase receptor Ret 2.7.10.1 0.653
2eva ADNMitogen-activated protein kinase kinase kinase 7 2.7.11.25 0.652
3q5i ANPProtein kinase, putative / 0.652
4nm0 ADPGlycogen synthase kinase-3 beta 2.7.11.26 0.652
4wh2 ADPN-acetylhexosamine 1-kinase 2.7.1.162 0.652
2b9f ADPMitogen-activated protein kinase FUS3 2.7.11.24 0.651
2itx ANPEpidermal growth factor receptor 2.7.10.1 0.651
4utd ACPAurora kinase A 2.7.11.1 0.651
3att ATPPutative aminoglycoside phosphotransferase 2.7.1 0.650
5cvf ATPCasein kinase II subunit alpha 2.7.11.1 0.650