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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3zux TCH Transporter

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3zux TCHTransporter / 1.127
3zuy TCHTransporter / 1.057
4klr CHDFerrochelatase, mitochondrial 4.99.1.1 0.667
5hgc HCYUncharacterized protein / 0.665
4bj8 BTNAvidin / 0.657
3hcr CHDFerrochelatase, mitochondrial 4.99.1.1 0.655
1ya3 STRMineralocorticoid receptor / 0.652