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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3zt3 ZT4 Integrase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3zt3 ZT4Integrase / 1.004
4cju JNSIntegrase / 0.952
3zt2 ZT2Integrase / 0.940
4cjf RVNIntegrase / 0.935
4chq CWUIntegrase / 0.927
4cie Y7NIntegrase / 0.922
4cgf UJ6Integrase / 0.914
4cgh LOZIntegrase / 0.908
4cf0 O5UIntegrase / 0.898
4cj3 E4FIntegrase / 0.896
4cf1 IY7Integrase / 0.889
4cgj NZLIntegrase / 0.887
4cgg K5QIntegrase / 0.886
4cgi NZLIntegrase / 0.858
4cfb OM3Integrase / 0.856
3zsx N44Integrase / 0.834
4ce9 O3NIntegrase / 0.831
4cgd 8P3Integrase / 0.829
4cf8 V7HIntegrase / 0.818
4cf2 3GMIntegrase / 0.812
3zsz OM2Integrase / 0.805
4ck1 OM1Integrase / 0.804
4cjs L0YIntegrase / 0.802
3zsy OM3Integrase / 0.801
4ceo G0TIntegrase / 0.797
4cef D0TIntegrase / 0.788
4cif JDXIntegrase / 0.780
4cjr FYMIntegrase / 0.774
3zsv ZSVIntegrase / 0.762
4ceb ZSVIntegrase / 0.762
4cig X0PIntegrase / 0.758
3zt1 OM1Integrase / 0.752
3zcm PX3Integrase / 0.740
4cfd S8YIntegrase / 0.730
3zt0 ZT0Integrase / 0.710
3zsq O4NIntegrase / 0.709
4ces NFWIntegrase / 0.704
4cfc 7NVIntegrase / 0.692
4cj4 S3GIntegrase / 0.671
5av0 47XDeath-associated protein kinase 1 2.7.11.1 0.652