Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3zt1 OM1 Integrase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3zt1 OM1Integrase / 1.044
4ck1 OM1Integrase / 1.027
4cif JDXIntegrase / 0.985
4ceo G0TIntegrase / 0.982
3zcm PX3Integrase / 0.973
3zsq O4NIntegrase / 0.966
3zsv ZSVIntegrase / 0.957
4ceb ZSVIntegrase / 0.957
4cig X0PIntegrase / 0.939
4cjr FYMIntegrase / 0.904
4ce9 O3NIntegrase / 0.902
3zt0 ZT0Integrase / 0.901
4cef D0TIntegrase / 0.877
4cfb OM3Integrase / 0.875
4cf8 V7HIntegrase / 0.868
3zsx N44Integrase / 0.866
4ceq QCHIntegrase / 0.861
3zsy OM3Integrase / 0.832
4cer VL4Integrase / 0.824
4cju JNSIntegrase / 0.819
4cjs L0YIntegrase / 0.818
3zt2 ZT2Integrase / 0.809
4cec 2SSIntegrase / 0.808
4cie Y7NIntegrase / 0.793
4cjf RVNIntegrase / 0.785
4cgf UJ6Integrase / 0.784
4cgd 8P3Integrase / 0.779
4chq CWUIntegrase / 0.778
4cee B0TIntegrase / 0.775
4cgh LOZIntegrase / 0.765
4ck3 K1TIntegrase / 0.761
3zt3 ZT4Integrase / 0.752
4cgi NZLIntegrase / 0.722
4cf2 3GMIntegrase / 0.718
3zsr O3NIntegrase / 0.680
4cez O3NIntegrase / 0.680