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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3zt0 ZT0 Integrase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3zt0 ZT0Integrase / 1.058
3zsq O4NIntegrase / 1.044
4cig X0PIntegrase / 1.026
3zcm PX3Integrase / 1.012
4cjr FYMIntegrase / 0.980
4cif JDXIntegrase / 0.963
3zsv ZSVIntegrase / 0.933
4ceb ZSVIntegrase / 0.933
4ck1 OM1Integrase / 0.917
3zt1 OM1Integrase / 0.901
4cfb OM3Integrase / 0.891
3zsx N44Integrase / 0.888
3zsy OM3Integrase / 0.886
4cjs L0YIntegrase / 0.873
4ceo G0TIntegrase / 0.868
4cf8 V7HIntegrase / 0.821
4cef D0TIntegrase / 0.805
4ce9 O3NIntegrase / 0.804
3zt2 ZT2Integrase / 0.768
4cjf RVNIntegrase / 0.746
3zsw ZSWIntegrase / 0.741
4cea ZSWIntegrase / 0.741
3zsr O3NIntegrase / 0.722
4cez O3NIntegrase / 0.722
4cf1 IY7Integrase / 0.717
3zt3 ZT4Integrase / 0.710
4ceq QCHIntegrase / 0.707
4cgi NZLIntegrase / 0.707
4cie Y7NIntegrase / 0.705
4cf0 O5UIntegrase / 0.704
4cee B0TIntegrase / 0.700
4cgg K5QIntegrase / 0.698
4cgh LOZIntegrase / 0.693
4ck3 K1TIntegrase / 0.693
4cgf UJ6Integrase / 0.685
4chq CWUIntegrase / 0.679
4cju JNSIntegrase / 0.675
4cf2 3GMIntegrase / 0.654