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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3zp4 TSA Chorismate mutase AroH 5.4.99.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3zp4 TSAChorismate mutase AroH 5.4.99.5 0.954
2cht TSAChorismate mutase AroH 5.4.99.5 0.822
1com PREChorismate mutase AroH 5.4.99.5 0.765
4ubs DIFPentalenic acid synthase 1.14.15.11 0.682
1eqg IBPProstaglandin G/H synthase 1 1.14.99.1 0.669
1q4g BFLProstaglandin G/H synthase 1 1.14.99.1 0.669
4ph9 IBPProstaglandin G/H synthase 2 1.14.99.1 0.655
3qfc NAPNADPH--cytochrome P450 reductase / 0.651
4j36 1HRKynurenine 3-monooxygenase / 0.650
4kyh ZSTLactoylglutathione lyase 4.4.1.5 0.650