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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3zo4 QWI cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3zo4 QWIcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.869
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
2vo7 M05cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.705
2vo3 M04cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.677
3mvj XFEcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.673
2uvy GVIcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.671
1uvr BI83-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.667
1ny3 ADPMAP kinase-activated protein kinase 2 2.7.11.1 0.661
3idc ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.656
4hpt ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.654
3idb ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.652
3x2v ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.652
4dh5 ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.651
4dn5 AGSMitogen-activated protein kinase kinase kinase 14 2.7.11.25 0.651
4utd ACPAurora kinase A 2.7.11.1 0.651
2eb3 ANPEpidermal growth factor receptor 2.7.10.1 0.650
5l8l ADPAurora kinase A 2.7.11.1 0.650