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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3zlo X8U Bcl-2-like protein 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3zlo X8UBcl-2-like protein 1 / 1.431
3zln H0YBcl-2-like protein 1 / 0.860
3zk6 H1IBcl-2-like protein 1 / 0.691
4lvt 1XJApoptosis regulator Bcl-2 / 0.669
3wiz LC6Bcl-2-like protein 1 / 0.657
3qci NX3Receptor-type tyrosine-protein phosphatase gamma 3.1.3.48 0.655