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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3zj6 VM2 Raucaffricine-O-beta-D-glucosidase 3.2.1.125

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3zj6 VM2Raucaffricine-O-beta-D-glucosidase 3.2.1.125 1.213
3zj7 C1KStrictosidine-O-beta-D-glucosidase 3.2.1.105 0.939
2j7c IDEBeta-glucosidase A 3.2.1.21 0.885
2j7d GI1Beta-glucosidase A 3.2.1.21 0.842
3vil SA0Beta-glucosidase / 0.837
2e40 LGCBeta-glucosidase 1A 3.2.1.21 0.818
2wbg LGSBeta-glucosidase A 3.2.1.21 0.749
4f79 P53Putative phospho-beta-glucosidase / 0.720
4azh LOGBeta-N-acetylhexosaminidase 3.2.1.52 0.683
2xwe AMFGlucosylceramidase 3.2.1.45 0.672
2wcg MT5Glucosylceramidase 3.2.1.45 0.661
3ptq NFGBeta-glucosidase 12 / 0.660
2jf6 S55Strictosidine-O-beta-D-glucosidase 3.2.1.105 0.650