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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3zho FMN NAD(P)H dehydrogenase (quinone)

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3zho FMNNAD(P)H dehydrogenase (quinone) / 1.150
4dy4 FMNNAD(P)H dehydrogenase (quinone) / 1.069
2r97 FMNNAD(P)H dehydrogenase (quinone) / 0.989
5f12 FMNNAD(P)H dehydrogenase (quinone) / 0.918
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.905
2r96 FMNNAD(P)H dehydrogenase (quinone) / 0.751
5a4k FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.739
1kbo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.735
5eai FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.735
4gi5 FADPutative NAD(P)H dehydrogenase (Quinone) / 0.725
4n9q FMNFMN-dependent NADH-azoreductase 1 / 0.724
2hpv FMNFMN-dependent NADH-azoreductase 1.7 0.716
1dxo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.714
4n65 FMNFMN-dependent NADH-azoreductase 1 / 0.703
1d4a FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.698
3klb FMNUncharacterized protein / 0.698
4bmo FMNProtein NrdI / 0.697
1h66 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.696
3n3b FMNProtein NrdI / 0.692
1h69 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.691
1qr2 FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.691
3rpe FADPutative modulator of drug activity / 0.690
1ych FMNNitric oxide reductase 1 0.689
4r81 FMNPredicted NADH dehydrogenase / 0.686
4j8p FMNFlavodoxin / 0.685
4qoe FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.684
3lcm FADPutative oxidoreductase / 0.680
1ycg FMNNitric oxide reductase 1 0.678
1gox FMNPeroxisomal (S)-2-hydroxy-acid oxidase 1.1.3.15 0.675
1gg5 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.672
2z9d FMNFMN-dependent NADH-azoreductase / 0.672
1qbg FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.671
1ycf FMNNitric oxide reductase 1 0.671
1dxq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.670
4qof FMNRibosyldihydronicotinamide dehydrogenase [quinone] / 0.669
3in6 FMNUncharacterized protein / 0.668
2qmy FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.667
3n39 FMNProtein NrdI / 0.667
2ohi FMNType A flavoprotein FprA 1 0.665
4z9r FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.665
4zvn FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.665
1hsk FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.664
3f90 FMNFlavodoxin / 0.664
2ohj FMNType A flavoprotein FprA 1 0.663
1h7w FMNDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.661
2ohh FMNType A flavoprotein FprA 1 0.661
4aut FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.659
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.657
4wzh FMNDihydroorotate dehydrogenase (fumarate) / 0.657
1akw FMNFlavodoxin / 0.656
2q9u FMNA-type flavoprotein / 0.654
3n3a FMNProtein NrdI / 0.653