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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3zec ANP Adenosine monophosphate-protein transferase SoFic 2.7.7.n1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3zec ANPAdenosine monophosphate-protein transferase SoFic 2.7.7.n1 1.082
3se5 ANPAdenosine monophosphate-protein transferase NmFic 2.7.7.n1 0.853
3zlm ANPAdenosine monophosphate-protein transferase NmFic 2.7.7.n1 0.826
4u07 ATPAdenosine monophosphate-protein transferase FICD 2.7.7.n1 0.810
3zcb ATPAdenosine monophosphate-protein transferase VbhT 2.7.7.n1 0.790
4x2d ATPFic family protein putative filamentation induced by cAMP protein / 0.784
4u0s ADPAdenosine monophosphate-protein transferase FICD 2.7.7.n1 0.741
3zcn ATPAdenosine monophosphate-protein transferase SoFic 2.7.7.n1 0.712
4u0z APCAdenosine monophosphate-protein transferase FICD 2.7.7.n1 0.695
3e39 FMNNitroreductase / 0.659
2w5a ADPSerine/threonine-protein kinase Nek2 2.7.11.1 0.658
4co4 ATPNitrogen regulatory protein P-II 1 / 0.654
3c3x NAPEugenol synthase 1 1.1.1.318 0.653