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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3zc3 NAP Ferredoxin--NADP reductase 1.18.1.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3zc3 NAPFerredoxin--NADP reductase 1.18.1.2 1.401
1ja1 NAPNADPH--cytochrome P450 reductase / 0.842
4yaf 2AMNADPH--cytochrome P450 reductase / 0.817
1tll NAPNitric oxide synthase, brain 1.14.13.39 0.811
3qfs NAPNADPH--cytochrome P450 reductase / 0.809
4y9r NAPNADPH--cytochrome P450 reductase / 0.802
4yaw 2AMNADPH--cytochrome P450 reductase / 0.799
4yao 2AMNADPH--cytochrome P450 reductase / 0.795
1fnd A2PFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.790
4y7c NAPNADPH--cytochrome P450 reductase / 0.781
4yau 2AMNADPH--cytochrome P450 reductase / 0.781
4yal 2AMNADPH--cytochrome P450 reductase / 0.768
3qfc NAPNADPH--cytochrome P450 reductase / 0.764
3qft NAPNADPH--cytochrome P450 reductase / 0.764
1amo NAPNADPH--cytochrome P450 reductase / 0.762
4y9u NAPNADPH--cytochrome P450 reductase / 0.749
1ja0 NAPNADPH--cytochrome P450 reductase / 0.744
3qfr NAPNADPH--cytochrome P450 reductase / 0.743
1gjr NAPFerredoxin--NADP reductase 1.18.1.2 0.741
3qe2 NAPNADPH--cytochrome P450 reductase / 0.732
1f20 NAPNitric oxide synthase, brain 1.14.13.39 0.726
3ojx NAPNADPH--cytochrome P450 reductase / 0.723
2bf4 NAPNADPH--cytochrome P450 reductase / 0.710
2bn4 NAPNADPH--cytochrome P450 reductase / 0.700
2rc6 NAPFerredoxin--NADP reductase / 0.693
2bpo NAPNADPH--cytochrome P450 reductase / 0.691
1wkg POI[LysW]-aminoadipate semialdehyde transaminase / 0.670
3iv6 SAMUncharacterized protein / 0.653
2d7d ADPUvrABC system protein B / 0.651
4kot CE3Uncharacterized protein / 0.651