Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3x22 FMN Oxygen-insensitive NAD(P)H nitroreductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3x22 FMNOxygen-insensitive NAD(P)H nitroreductase / 1.276
1ylr FMNOxygen-insensitive NAD(P)H nitroreductase / 1.162
1icu FMNOxygen-insensitive NAD(P)H nitroreductase / 1.157
1oon FMNOxygen-insensitive NAD(P)H nitroreductase / 1.124
1nec FMNOxygen-insensitive NAD(P)H nitroreductase 1 1.118
1oo5 FMNOxygen-insensitive NAD(P)H nitroreductase / 1.102
1ds7 FMNOxygen-insensitive NAD(P)H nitroreductase / 1.099
1kqb FMNOxygen-insensitive NAD(P)H nitroreductase / 1.097
1yki FMNOxygen-insensitive NAD(P)H nitroreductase / 1.087
1ooq FMNOxygen-insensitive NAD(P)H nitroreductase / 1.086
1kqd FMNOxygen-insensitive NAD(P)H nitroreductase / 1.071
1vfr FMNMajor NAD(P)H-flavin oxidoreductase 1.6.99 1.060
1ylu FMNOxygen-insensitive NAD(P)H nitroreductase / 1.056
1kqc FMNOxygen-insensitive NAD(P)H nitroreductase / 1.052
3x21 FMNOxygen-insensitive NAD(P)H nitroreductase / 1.004
1icv FMNOxygen-insensitive NAD(P)H nitroreductase / 0.978
2wzw FMNNitroreductase NfnB / 0.954
2wzv FMNNitroreductase NfnB / 0.950
3gag FMNPutative NADH dehydrogenase NAD(P)H nitroreductase / 0.947
3of4 FMNNitroreductase / 0.942
2hay FMNPutative NAD(P)H-flavin oxidoreductase / 0.923
3koq FMNPutative nitroreductase / 0.923
3ge6 FMNNitroreductase / 0.915
3qdl FMNOxygen-insensitive NADPH nitroreductase / 0.878
3e39 FMNNitroreductase / 0.868
3bem FMNPutative NAD(P)H nitroreductase MhqN 1 0.857
3pxv FMNNitroreductase / 0.856
3gfd FMNIodotyrosine deiodinase 1 1.21.1.1 0.841
4eo3 FMNBacterioferritin comigratory protein/NADH dehydrogenase / 0.839
4ttc FMNIodotyrosine deiodinase 1 / 0.838
4xoo FMNCoenzyme F420:L-glutamate ligase / 0.822
2isl FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.809
4qly FMNEnone reductase CLA-ER / 0.801
3gh8 FMNIodotyrosine deiodinase 1 1.21.1.1 0.790
3eo8 FMNPutative nitroreductase / 0.788
4ttb FMNIodotyrosine deiodinase 1 / 0.784
3hj9 FMNUncharacterized protein / 0.764
2bkj FMNNADPH-flavin oxidoreductase / 0.751
2fre FMNNAD(P)H-flavin oxidoreductase / 0.744
2isj FMN5,6-dimethylbenzimidazole synthase 1.13.11.79 0.724
3to0 FMNIodotyrosine deiodinase 1 1.21.1.1 0.708
3e4v FMNUncharacterized protein / 0.696
4hnb FMNLOV protein / 0.694
3eof FMNPutative oxidase / 0.678
2isk FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.674
3djl FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.670
1a8p FADFerredoxin--NADP reductase / 0.669
4y9l FADAcyl-CoA dehydrogenase family member 11 / 0.669
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.659
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.657
2ard FDAFlavin-dependent tryptophan halogenase PrnA 1.14.19.9 0.656
2zrz FNRIsopentenyl-diphosphate delta-isomerase / 0.654
3anl SYC1-deoxy-D-xylulose 5-phosphate reductoisomerase 1.1.1.267 0.654
1udy FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.650
3vkj FNRIsopentenyl-diphosphate delta-isomerase / 0.650