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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3wzn BTN Streptavidin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3wzn BTNStreptavidin / 1.000
2y3f BTNStreptavidin / 0.986
3ry2 BTNStreptavidin / 0.984
3wyq BTNStreptavidin / 0.981
1mk5 BTNStreptavidin / 0.979
2izh BTNStreptavidin / 0.970
2izf BTNStreptavidin / 0.969
2izi BTNStreptavidin / 0.962
1nqm BTNStreptavidin / 0.957
4gda BTNStreptavidin / 0.951
2rtg BTNStreptavidin / 0.945
1swe BTNStreptavidin / 0.944
2rtd BTNStreptavidin / 0.944
3wyp BSOStreptavidin / 0.938
1df8 BTNStreptavidin / 0.935
1n9m BTNStreptavidin / 0.935
1luq BTNStreptavidin / 0.930
2rtf BTNStreptavidin / 0.930
2izg BTNStreptavidin / 0.929
2izj BTNStreptavidin / 0.926
1n43 BTNStreptavidin / 0.921
2rte BTNStreptavidin / 0.916
4gd9 BTNStreptavidin / 0.914
2zsc BTNTamavidin2 / 0.911
3rdo BTNStreptavidin / 0.911
1i9h BNIStreptavidin / 0.905
4dne DTBStreptavidin / 0.903
4z28 BTNHoefavidin / 0.897
2izl IMIStreptavidin / 0.896
3ew2 BTNHypothetical conserved protein / 0.894
1mep BTNStreptavidin / 0.892
1nc9 IMIStreptavidin / 0.890
1swg BTNStreptavidin / 0.879
3rdq DTBStreptavidin / 0.879
2rtp IMIStreptavidin / 0.874
1lcz BH7Streptavidin / 0.871
1stp BTNStreptavidin / 0.868
1ndj BTNStreptavidin / 0.865
4bx7 B4FStreptavidin / 0.860
1rxj BNIStreptavidin / 0.856
1lcw SHMStreptavidin / 0.855
1swr BTNStreptavidin / 0.850
2fhl BNIAvidin-related protein 4/5 / 0.839
1y52 BTNAvidin-related protein 4/5 / 0.838
2fhn BNIAvidin-related protein 4/5 / 0.838
2rtm IMIStreptavidin / 0.834
1swt BTNStreptavidin / 0.828
1swn BTNStreptavidin / 0.798
4bcs BTNAvidin-related protein 4/5 / 0.798
1swp BTNStreptavidin / 0.793
4yvb BTNStreptavidin / 0.789
3t2w BTNAvidin/streptavidin / 0.785
4bj8 BTNAvidin / 0.769
2rtl IMIStreptavidin / 0.765
3vhi VHIAvidin / 0.758
2c4i BTNAvidin / 0.754
2jgs BTNAvidin / 0.750
1swd BTNStreptavidin / 0.736
2rtn IMIStreptavidin / 0.725
1ij8 BNIAvidin / 0.722
3vgw NVZAvidin / 0.706
2rtq IMIStreptavidin / 0.693
2uyw BTNAvd protein / 0.680
2avi BTNAvidin / 0.677
2rtr IMIStreptavidin / 0.671
2uz2 BTNAvd protein / 0.662
2ync YNCGlycylpeptide N-tetradecanoyltransferase / 0.658
4ggz BTNBll1558 protein / 0.651