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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3wrm CAM Camphor 5-monooxygenase 1.14.15.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3wrm CAMCamphor 5-monooxygenase 1.14.15.1 0.815
3wrh CAMCamphor 5-monooxygenase 1.14.15.1 0.810
3fwg CAMCamphor 5-monooxygenase 1.14.15.1 0.806
3wrl CAMCamphor 5-monooxygenase 1.14.15.1 0.806
1yrc CAMCamphor 5-monooxygenase 1.14.15.1 0.804
3fwj CAMCamphor 5-monooxygenase 1.14.15.1 0.801
4ek1 CAMCamphor 5-monooxygenase 1.14.15.1 0.800
1yrd CAMCamphor 5-monooxygenase 1.14.15.1 0.798
3l63 CAMCamphor 5-monooxygenase 1.14.15.1 0.796
2feu CAMCamphor 5-monooxygenase 1.14.15.1 0.787
4l49 CAMCamphor 5-monooxygenase 1.14.15.1 0.785
2cpp CAMCamphor 5-monooxygenase 1.14.15.1 0.784
1uyu CAMCamphor 5-monooxygenase 1.14.15.1 0.779
3fwi CAMCamphor 5-monooxygenase 1.14.15.1 0.777
4l4c CAMCamphor 5-monooxygenase 1.14.15.1 0.772
2a1n CAMCamphor 5-monooxygenase 1.14.15.1 0.770
4g3r CAMCamphor 5-monooxygenase 1.14.15.1 0.768
1dz4 CAMCamphor 5-monooxygenase 1.14.15.1 0.767
1t87 CAMCamphor 5-monooxygenase 1.14.15.1 0.753
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
2puc GUNHTH-type transcriptional repressor PurR / 0.744
4e5l DBHPolymerase acidic protein / 0.744
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.744
1dz6 CAMCamphor 5-monooxygenase 1.14.15.1 0.741
2qbn CAMCamphor 5-monooxygenase 1.14.15.1 0.736
4cp4 CAMCamphor 5-monooxygenase 1.14.15.1 0.729
4l4e CAMCamphor 5-monooxygenase 1.14.15.1 0.711
4l4f CAMCamphor 5-monooxygenase 1.14.15.1 0.711
2a1m CAMCamphor 5-monooxygenase 1.14.15.1 0.705
3wrj CAMCamphor 5-monooxygenase 1.14.15.1 0.705
6cp4 CAMCamphor 5-monooxygenase 1.14.15.1 0.693
4l4a CAMCamphor 5-monooxygenase 1.14.15.1 0.692
4l4b CAMCamphor 5-monooxygenase 1.14.15.1 0.680
4l4d CAMCamphor 5-monooxygenase 1.14.15.1 0.674
3cpp CAMCamphor 5-monooxygenase 1.14.15.1 0.664
1ozq PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hqv QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2z97 CAMCamphor 5-monooxygenase 1.14.15.1 0.651