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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3wbz ATP tRNA(His) guanylyltransferase {ECO:0000256|PIRNR:PIRNR028980}

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3wbz ATPtRNA(His) guanylyltransferase {ECO:0000256|PIRNR:PIRNR028980} / 0.943
4kgm ATPUncharacterized protein / 0.733
4fjh DGTDNA-directed DNA polymerase / 0.726
4fj5 DTPDNA-directed DNA polymerase / 0.724
4fjm DCPDNA-directed DNA polymerase / 0.696
4dtp DGTDNA-directed DNA polymerase / 0.695
4m42 ATPDNA-directed DNA polymerase / 0.695
4dfk 0L5DNA polymerase I, thermostable 2.7.7.7 0.691
4kgk GTPUncharacterized protein / 0.690
3otb DGTProbable tRNA(His) guanylyltransferase 2.7.7.79 0.677
2q66 ATPPoly(A) polymerase 2.7.7.19 0.668
4rwn APC2'-5'-oligoadenylate synthase 1 2.7.7.84 0.668
1qtm TTPDNA polymerase I, thermostable 2.7.7.7 0.665
1qsy DDSDNA polymerase I, thermostable 2.7.7.7 0.660
2b51 UTPRNA editing complex protein MP57 / 0.660
1wc1 TATAdenylate cyclase / 0.659
4xj3 GTPCyclic GMP-AMP synthase / 0.659
4xj4 3ATCyclic GMP-AMP synthase / 0.659
3g6x DGTDNA polymerase iota 2.7.7.7 0.658
4df4 0L3DNA polymerase I, thermostable 2.7.7.7 0.657
4k97 ATPCyclic GMP-AMP synthase / 0.652