sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3w5t | LHP | Vitamin D3 receptor |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 3w5t | LHP | Vitamin D3 receptor | / | 1.390 | |
| 3w5r | LOA | Vitamin D3 receptor | / | 1.217 | |
| 3w5p | 4OA | Vitamin D3 receptor | / | 1.109 | |
| 3w5q | 3KL | Vitamin D3 receptor | / | 1.056 | |
| 4q0a | 4OA | Vitamin D3 receptor A | / | 1.051 | |
| 2jn3 | JN3 | Fatty acid-binding protein, liver | / | 0.762 | |
| 1xu7 | CPS | Corticosteroid 11-beta-dehydrogenase isozyme 1 | 1.1.1.146 | 0.733 | |
| 2b01 | TUD | Phospholipase A2, major isoenzyme | 3.1.1.4 | 0.730 | |
| 3vt8 | YI3 | Vitamin D3 receptor | / | 0.719 | |
| 2hrc | CHD | Ferrochelatase, mitochondrial | 4.99.1.1 | 0.718 | |
| 2azz | TCH | Phospholipase A2, major isoenzyme | 3.1.1.4 | 0.717 | |
| 2rlc | CHD | Choloylglycine hydrolase | 3.5.1.24 | 0.711 | |
| 4fhh | 0U3 | Vitamin D3 receptor A | / | 0.710 | |
| 4g21 | 0VP | Vitamin D3 receptor A | / | 0.710 | |
| 2qd4 | CHD | Ferrochelatase, mitochondrial | 4.99.1.1 | 0.700 | |
| 2piv | DHT | Androgen receptor | / | 0.681 | |
| 2q7k | TES | Androgen receptor | / | 0.681 | |
| 1t63 | DHT | Androgen receptor | / | 0.680 | |
| 2piu | DHT | Androgen receptor | / | 0.679 | |
| 2b04 | CHO | Phospholipase A2, major isoenzyme | 3.1.1.4 | 0.678 | |
| 2hcd | BIV | Vitamin D3 receptor A | / | 0.676 | |
| 2pnu | ENM | Androgen receptor | / | 0.676 | |
| 1gs4 | ZK5 | Androgen receptor | / | 0.675 | |
| 2z4j | DHT | Androgen receptor | / | 0.674 | |
| 1ot7 | CHC | Bile acid receptor | / | 0.673 | |
| 1t5z | DHT | Androgen receptor | / | 0.667 | |
| 1lnm | DTX | Bilin-binding protein | / | 0.665 | |
| 2pkl | DHT | Androgen receptor | / | 0.665 | |
| 1zhy | CLR | Oxysterol-binding protein homolog 4 | / | 0.664 | |
| 4ofu | DHT | Androgen receptor | / | 0.664 | |
| 1t7f | DHT | Androgen receptor | / | 0.663 | |
| 1xj7 | DHT | Androgen receptor | / | 0.663 | |
| 3g1r | FIT | 3-oxo-5-beta-steroid 4-dehydrogenase | / | 0.663 | |
| 4g1d | 0VK | Vitamin D3 receptor A | / | 0.663 | |
| 4ofr | DHT | Androgen receptor | / | 0.662 | |
| 2am9 | TES | Androgen receptor | / | 0.654 | |
| 1o1v | TCH | Gastrotropin | / | 0.652 | |
| 1t74 | DHT | Androgen receptor | / | 0.652 | |
| 1t73 | DHT | Androgen receptor | / | 0.651 | |
| 2q7i | TES | Androgen receptor | / | 0.650 | |
| 4j6b | PLO | Cytochrome P450 monooxygenase | / | 0.650 |