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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3w0i O11 Vitamin D3 receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3w0i O11Vitamin D3 receptor / 1.533
3w0j T08Vitamin D3 receptor / 1.124
3w0h W12Vitamin D3 receptor / 1.023
3w0g W07Vitamin D3 receptor / 0.951
4fhh 0U3Vitamin D3 receptor A / 0.929
3w0c 6DSVitamin D3 receptor / 0.889
3w0a DS5Vitamin D3 receptor / 0.878
4fhi 0S4Vitamin D3 receptor A / 0.813
1s19 MC9Vitamin D3 receptor / 0.749
3w0y DS4Vitamin D3 receptor / 0.743
1ie8 KH1Vitamin D3 receptor / 0.727
1ie9 VDXVitamin D3 receptor / 0.680
2o4j VD4Vitamin D3 receptor / 0.676
3kpz ZNEVitamin D3 receptor / 0.676
3vrv YSDVitamin D3 receptor / 0.669
2hb7 O1CVitamin D3 receptor / 0.664
3vt7 VDXVitamin D3 receptor / 0.660
1rjk VDZVitamin D3 receptor / 0.653
3vt4 5YIVitamin D3 receptor / 0.650