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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3w0h W12 Vitamin D3 receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3w0h W12Vitamin D3 receptor / 1.630
3w0j T08Vitamin D3 receptor / 1.044
3w0i O11Vitamin D3 receptor / 1.023
4fhi 0S4Vitamin D3 receptor A / 0.997
3w0g W07Vitamin D3 receptor / 0.993
4fhh 0U3Vitamin D3 receptor A / 0.974
3w0c 6DSVitamin D3 receptor / 0.904
3w0y DS4Vitamin D3 receptor / 0.898
1ie9 VDXVitamin D3 receptor / 0.737
2o4r VD5Vitamin D3 receptor / 0.721
1s19 MC9Vitamin D3 receptor / 0.720
1rk3 VDXVitamin D3 receptor / 0.716
3vrv YSDVitamin D3 receptor / 0.711
3vt7 VDXVitamin D3 receptor / 0.703
4rup H97Vitamin D3 receptor A / 0.692
4ruo BIVVitamin D3 receptor A / 0.690
1s0z EB1Vitamin D3 receptor / 0.681
2har OCCVitamin D3 receptor / 0.681
3vt5 YI2Vitamin D3 receptor / 0.681
3vrt YS2Vitamin D3 receptor / 0.679
3vt4 5YIVitamin D3 receptor / 0.673
3vt8 YI3Vitamin D3 receptor / 0.668
4ruj VDXVitamin D3 receptor A / 0.668
2zla VDBVitamin D3 receptor / 0.662
3vt3 VDXVitamin D3 receptor / 0.659
4itf TFYVitamin D3 receptor / 0.657
2has C3OVitamin D3 receptor / 0.656
4nb6 444Nuclear receptor ROR-gamma / 0.656
1db1 VDXVitamin D3 receptor / 0.651
2hb7 O1CVitamin D3 receptor / 0.651
3que 3FFMitogen-activated protein kinase 14 / 0.651