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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3w0c 6DS Vitamin D3 receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3w0c 6DSVitamin D3 receptor / 1.751
3w0a DS5Vitamin D3 receptor / 1.671
3w0y DS4Vitamin D3 receptor / 1.190
3w0j T08Vitamin D3 receptor / 0.938
3w0h W12Vitamin D3 receptor / 0.904
3w0i O11Vitamin D3 receptor / 0.889
4ite TEYVitamin D3 receptor / 0.805
2hb7 O1CVitamin D3 receptor / 0.804
4fhi 0S4Vitamin D3 receptor A / 0.797
4fhh 0U3Vitamin D3 receptor A / 0.796
1ie9 VDXVitamin D3 receptor / 0.793
2ham C33Vitamin D3 receptor / 0.780
1s19 MC9Vitamin D3 receptor / 0.771
3m7r VDXVitamin D3 receptor / 0.748
2har OCCVitamin D3 receptor / 0.744
1db1 VDXVitamin D3 receptor / 0.742
3w0g W07Vitamin D3 receptor / 0.733
4rup H97Vitamin D3 receptor A / 0.701
2hb8 MVDVitamin D3 receptor / 0.699
2has C3OVitamin D3 receptor / 0.667
3afh GSUGlutamate--tRNA ligase 2 / 0.663