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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3vyf VYF Renin 3.4.23.15

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3vyf VYFRenin 3.4.23.15 1.282
3vyd VYDRenin 3.4.23.15 0.904
3vye VYERenin 3.4.23.15 0.876
3vuc HHERenin 3.4.23.15 0.736
3oad LPORenin 3.4.23.15 0.719
3oag LPQRenin 3.4.23.15 0.689
3o9l LPNRenin 3.4.23.15 0.677
3ufl 508Beta-secretase 1 3.4.23.46 0.668
3bhe BZNGag-Pol polyprotein 3.4.23.16 0.660