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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3vuz K15 Histone-lysine N-methyltransferase SETD7 2.1.1.43

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3vuz K15Histone-lysine N-methyltransferase SETD7 2.1.1.43 1.090
3vv0 KH3Histone-lysine N-methyltransferase SETD7 2.1.1.43 0.820
1n6c SAMHistone-lysine N-methyltransferase SETD7 2.1.1.43 0.812
3cbp SFGHistone-lysine N-methyltransferase SETD7 2.1.1.43 0.808
3swc SAHHistone-lysine N-methyltransferase EHMT1 / 0.722
2bqz SAHN-lysine methyltransferase KMT5A / 0.708
4qen SAHHistone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 2.1.1.43 0.701
3pdn SFGHistone-lysine N-methyltransferase SMYD3 2.1.1.43 0.694
1ozv SAHRibulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 2.1.1.127 0.691
2h2j SFGRibulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 2.1.1.127 0.691
2h23 SAHRibulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 2.1.1.127 0.689
4h12 SAHHistone-lysine N-methyltransferase SETD2 2.1.1.43 0.688
3ru0 SFGHistone-lysine N-methyltransferase SMYD3 2.1.1.43 0.682
4o6f SAHN-lysine methyltransferase SMYD2 / 0.677
4j83 SAMHistone-lysine N-methyltransferase SETD7 2.1.1.43 0.673
3n71 SFGHistone-lysine N-methyltransferase Smyd1 / 0.666
2h21 SAMRibulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 2.1.1.127 0.660
3m53 SAHHistone-lysine N-methyltransferase SETD7 2.1.1.43 0.660
5czy SAMEukaryotic huntingtin interacting protein B / 0.656
1p0y SAHRibulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 2.1.1.127 0.655
2rfi SAHHistone-lysine N-methyltransferase EHMT1 / 0.654
5jj0 SAMHistone-lysine N-methyltransferase EHMT2 / 0.654
4dsj DGTDNA polymerase I / 0.651