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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3vuc HHE Renin 3.4.23.15

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3vuc HHERenin 3.4.23.15 1.422
3vsx R32Renin 3.4.23.15 0.886
3vye VYERenin 3.4.23.15 0.738
3vyf VYFRenin 3.4.23.15 0.736
3oad LPORenin 3.4.23.15 0.682
1odx 0E8Gag-Pol polyprotein 3.4.23.16 0.668
2f3f AXFBeta-secretase 1 3.4.23.46 0.666
3vsw R31Renin 3.4.23.15 0.658
2fdp FRPBeta-secretase 1 3.4.23.46 0.656