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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3vtd TKD Vitamin D3 receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3vtd TKDVitamin D3 receptor / 1.668
3vtc TK3Vitamin D3 receptor / 1.388
3vtb TKAVitamin D3 receptor / 1.132
1rkg VD1Vitamin D3 receptor / 1.068
1rkh VD2Vitamin D3 receptor / 1.041
2zlc VDXVitamin D3 receptor / 1.040
4rup H97Vitamin D3 receptor A / 1.022
2o4j VD4Vitamin D3 receptor / 1.018
3vru YS3Vitamin D3 receptor / 1.004
1s0z EB1Vitamin D3 receptor / 1.003
3vt3 VDXVitamin D3 receptor / 0.999
1rjk VDZVitamin D3 receptor / 0.994
3vrv YSDVitamin D3 receptor / 0.994
2hb8 MVDVitamin D3 receptor / 0.991
3vrt YS2Vitamin D3 receptor / 0.984
1rk3 VDXVitamin D3 receptor / 0.972
3dr1 C5DVitamin D3 receptor A / 0.956
1txi TX5Vitamin D3 receptor / 0.950
4ia2 BIVVitamin D3 receptor A / 0.945
1ie9 VDXVitamin D3 receptor / 0.943
2hbh XE4Vitamin D3 receptor A / 0.943
3m7r VDXVitamin D3 receptor / 0.942
1ie8 KH1Vitamin D3 receptor / 0.938
3vt9 YI4Vitamin D3 receptor / 0.934
3vt8 YI3Vitamin D3 receptor / 0.932
3vt7 VDXVitamin D3 receptor / 0.929
3kpz ZNEVitamin D3 receptor / 0.914
3vt6 5YIVitamin D3 receptor / 0.823
3a78 3EVVitamin D3 receptor / 0.813
2zla VDBVitamin D3 receptor / 0.802
4ia7 BIVVitamin D3 receptor A / 0.769
2o4r VD5Vitamin D3 receptor / 0.768
4ruj VDXVitamin D3 receptor A / 0.743
3w0j T08Vitamin D3 receptor / 0.737
4fhh 0U3Vitamin D3 receptor A / 0.735
3vt5 YI2Vitamin D3 receptor / 0.732
4ruo BIVVitamin D3 receptor A / 0.732
3w0g W07Vitamin D3 receptor / 0.705
3vrw YS5Vitamin D3 receptor / 0.682
4g21 0VPVitamin D3 receptor A / 0.674
4g1z 0VPVitamin D3 receptor A / 0.671
4fhi 0S4Vitamin D3 receptor A / 0.670
3w5r LOAVitamin D3 receptor / 0.651