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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3vtb TKA Vitamin D3 receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3vtb TKAVitamin D3 receptor / 1.657
2o4j VD4Vitamin D3 receptor / 1.165
1rkg VD1Vitamin D3 receptor / 1.159
3vtd TKDVitamin D3 receptor / 1.132
4rup H97Vitamin D3 receptor A / 1.085
2zlc VDXVitamin D3 receptor / 1.072
1rjk VDZVitamin D3 receptor / 1.071
3vtc TK3Vitamin D3 receptor / 1.067
1rkh VD2Vitamin D3 receptor / 1.061
1rk3 VDXVitamin D3 receptor / 1.043
1s0z EB1Vitamin D3 receptor / 1.018
4ruj VDXVitamin D3 receptor A / 1.017
3dr1 C5DVitamin D3 receptor A / 1.014
1db1 VDXVitamin D3 receptor / 1.013
1s19 MC9Vitamin D3 receptor / 0.999
3kpz ZNEVitamin D3 receptor / 0.995
4ia1 BIVVitamin D3 receptor A / 0.994
2hb8 MVDVitamin D3 receptor / 0.987
2has C3OVitamin D3 receptor / 0.970
3vt7 VDXVitamin D3 receptor / 0.967
1ie8 KH1Vitamin D3 receptor / 0.944
4ia3 BIVVitamin D3 receptor A / 0.937
2hbh XE4Vitamin D3 receptor A / 0.929
3m7r VDXVitamin D3 receptor / 0.927
1ie9 VDXVitamin D3 receptor / 0.926
3vt9 YI4Vitamin D3 receptor / 0.918
4ia2 BIVVitamin D3 receptor A / 0.900
3vt3 VDXVitamin D3 receptor / 0.895
4ia7 BIVVitamin D3 receptor A / 0.894
2hc4 VDXVitamin D3 receptor A / 0.892
3a78 3EVVitamin D3 receptor / 0.875
2hcd BIVVitamin D3 receptor A / 0.872
4ite TEYVitamin D3 receptor / 0.871
1txi TX5Vitamin D3 receptor / 0.870
2zl9 VDAVitamin D3 receptor / 0.864
2hb7 O1CVitamin D3 receptor / 0.803
3vrv YSDVitamin D3 receptor / 0.788
2o4r VD5Vitamin D3 receptor / 0.771
3vt5 YI2Vitamin D3 receptor / 0.771
3vru YS3Vitamin D3 receptor / 0.763
4g2h 0VQVitamin D3 receptor A / 0.748
2ham C33Vitamin D3 receptor / 0.723
3w0a DS5Vitamin D3 receptor / 0.720
2har OCCVitamin D3 receptor / 0.716
3w0g W07Vitamin D3 receptor / 0.660
4itf TFYVitamin D3 receptor / 0.658