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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3vt9 YI4 Vitamin D3 receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3vt9 YI4Vitamin D3 receptor / 1.571
3vt8 YI3Vitamin D3 receptor / 1.375
1rkh VD2Vitamin D3 receptor / 1.249
2zlc VDXVitamin D3 receptor / 1.159
3vt3 VDXVitamin D3 receptor / 1.141
3vrv YSDVitamin D3 receptor / 1.116
2zl9 VDAVitamin D3 receptor / 1.082
2zla VDBVitamin D3 receptor / 1.077
3vt7 VDXVitamin D3 receptor / 1.036
3vt5 YI2Vitamin D3 receptor / 1.035
3vt4 5YIVitamin D3 receptor / 1.023
3vt6 5YIVitamin D3 receptor / 1.018
2hb7 O1CVitamin D3 receptor / 1.017
4ruj VDXVitamin D3 receptor A / 0.983
2har OCCVitamin D3 receptor / 0.961
1txi TX5Vitamin D3 receptor / 0.958
3vru YS3Vitamin D3 receptor / 0.951
1rk3 VDXVitamin D3 receptor / 0.947
3a78 3EVVitamin D3 receptor / 0.935
3vtd TKDVitamin D3 receptor / 0.934
2o4r VD5Vitamin D3 receptor / 0.930
3m7r VDXVitamin D3 receptor / 0.923
4itf TFYVitamin D3 receptor / 0.923
1db1 VDXVitamin D3 receptor / 0.920
3vtb TKAVitamin D3 receptor / 0.918
2has C3OVitamin D3 receptor / 0.903
2hc4 VDXVitamin D3 receptor A / 0.891
4ia3 BIVVitamin D3 receptor A / 0.890
1s19 MC9Vitamin D3 receptor / 0.889
3vtc TK3Vitamin D3 receptor / 0.884
2o4j VD4Vitamin D3 receptor / 0.882
3vrw YS5Vitamin D3 receptor / 0.878
1rkg VD1Vitamin D3 receptor / 0.871
1s0z EB1Vitamin D3 receptor / 0.865
2ham C33Vitamin D3 receptor / 0.864
2hb8 MVDVitamin D3 receptor / 0.856
1ie9 VDXVitamin D3 receptor / 0.847
4ia2 BIVVitamin D3 receptor A / 0.810
1ie8 KH1Vitamin D3 receptor / 0.805
4ia7 BIVVitamin D3 receptor A / 0.795
3kpz ZNEVitamin D3 receptor / 0.787
3vrt YS2Vitamin D3 receptor / 0.783
4fhh 0U3Vitamin D3 receptor A / 0.768
4ite TEYVitamin D3 receptor / 0.735
4ruo BIVVitamin D3 receptor A / 0.730
1rjk VDZVitamin D3 receptor / 0.703
3dr1 C5DVitamin D3 receptor A / 0.685
4fhi 0S4Vitamin D3 receptor A / 0.660
4g2h 0VQVitamin D3 receptor A / 0.658