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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3vsw R31 Renin 3.4.23.15

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3vsw R31Renin 3.4.23.15 1.303
3vsx R32Renin 3.4.23.15 0.800
2v13 C40Renin 3.4.23.15 0.753
2oah QINBeta-secretase 1 3.4.23.46 0.667
3oag LPQRenin 3.4.23.15 0.664
4gfg 0XFTyrosine-protein kinase SYK 2.7.10.2 0.664
2g27 4LGRenin 3.4.23.15 0.663
3k1w BFXRenin 3.4.23.15 0.659
3vuc HHERenin 3.4.23.15 0.658
3vyd VYDRenin 3.4.23.15 0.657
2fs4 PZ1Renin 3.4.23.15 0.652
2v16 C47Renin 3.4.23.15 0.650