Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3vsp EK8 Peroxisome proliferator-activated receptor gamma

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3vsp EK8Peroxisome proliferator-activated receptor gamma / 1.316
3v9v 21LPeroxisome proliferator-activated receptor gamma / 0.707
2zno S44Peroxisome proliferator-activated receptor gamma / 0.692
3gbk 2PQPeroxisome proliferator-activated receptor gamma / 0.688
1knu YPAPeroxisome proliferator-activated receptor gamma / 0.671
2znq 401Peroxisome proliferator-activated receptor delta / 0.671
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.662
2gtk 208Peroxisome proliferator-activated receptor gamma / 0.661
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2puc GUNHTH-type transcriptional repressor PurR / 0.660
4e5i 0N9Polymerase acidic protein / 0.660
4e5l DBHPolymerase acidic protein / 0.660
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.660
3v9y 24LPeroxisome proliferator-activated receptor gamma / 0.658
4rw6 494Gag-Pol polyprotein 2.7.7.49 0.655
1fm6 BRLPeroxisome proliferator-activated receptor gamma / 0.654
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.654
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.651
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.650