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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3vs6 VSH Tyrosine-protein kinase HCK 2.7.10.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3vs6 VSHTyrosine-protein kinase HCK 2.7.10.2 1.133
2c0o L2GTyrosine-protein kinase HCK 2.7.10.2 0.882
2c0t L3GTyrosine-protein kinase HCK 2.7.10.2 0.877
3vs5 VSGTyrosine-protein kinase HCK 2.7.10.2 0.829
3vs0 VS0Tyrosine-protein kinase HCK 2.7.10.2 0.771
3vs1 VSATyrosine-protein kinase HCK 2.7.10.2 0.750
3vrz VRZTyrosine-protein kinase HCK 2.7.10.2 0.738
3qlf PD5Proto-oncogene tyrosine-protein kinase Src 2.7.10.2 0.736
3wze BAXVascular endothelial growth factor receptor 2 2.7.10.1 0.672
3vs4 VSFTyrosine-protein kinase HCK 2.7.10.2 0.651
3vhe 42QVascular endothelial growth factor receptor 2 2.7.10.1 0.650