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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3vs1 VSA Tyrosine-protein kinase HCK 2.7.10.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3vs1 VSATyrosine-protein kinase HCK 2.7.10.2 1.160
2c0t L3GTyrosine-protein kinase HCK 2.7.10.2 0.811
2c0i L1GTyrosine-protein kinase HCK 2.7.10.2 0.787
3vs5 VSGTyrosine-protein kinase HCK 2.7.10.2 0.780
2c0o L2GTyrosine-protein kinase HCK 2.7.10.2 0.753
3vs6 VSHTyrosine-protein kinase HCK 2.7.10.2 0.750
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
3vrz VRZTyrosine-protein kinase HCK 2.7.10.2 0.734
1yol S03Proto-oncogene tyrosine-protein kinase Src 2.7.10.2 0.730
3vs0 VS0Tyrosine-protein kinase HCK 2.7.10.2 0.718
3vry B43Tyrosine-protein kinase HCK 2.7.10.2 0.713
3vs2 VSBTyrosine-protein kinase HCK 2.7.10.2 0.713
3vs7 KS1Tyrosine-protein kinase HCK 2.7.10.2 0.709
3vs4 VSFTyrosine-protein kinase HCK 2.7.10.2 0.704
3vs3 VSETyrosine-protein kinase HCK 2.7.10.2 0.693
1qpe PP2Tyrosine-protein kinase Lck 2.7.10.2 0.678
1qcf PP1Tyrosine-protein kinase HCK 2.7.10.2 0.670
3ncg BK1Calmodulin-domain protein kinase 1, putative / 0.662
4e5f 0N7Polymerase acidic protein / 0.660
3eta 351Insulin receptor 2.7.10.1 0.656