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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3vrw YS5 Vitamin D3 receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3vrw YS5Vitamin D3 receptor / 1.560
2o4r VD5Vitamin D3 receptor / 1.198
3vru YS3Vitamin D3 receptor / 1.091
3vrv YSDVitamin D3 receptor / 1.090
2zla VDBVitamin D3 receptor / 1.027
2zl9 VDAVitamin D3 receptor / 1.007
1rkh VD2Vitamin D3 receptor / 0.995
3vt8 YI3Vitamin D3 receptor / 0.967
1s19 MC9Vitamin D3 receptor / 0.966
3vt6 5YIVitamin D3 receptor / 0.960
3vt3 VDXVitamin D3 receptor / 0.959
2zlc VDXVitamin D3 receptor / 0.957
4ruj VDXVitamin D3 receptor A / 0.955
1rk3 VDXVitamin D3 receptor / 0.949
3vt5 YI2Vitamin D3 receptor / 0.941
2har OCCVitamin D3 receptor / 0.930
1ie8 KH1Vitamin D3 receptor / 0.906
1ie9 VDXVitamin D3 receptor / 0.902
4itf TFYVitamin D3 receptor / 0.902
3vt4 5YIVitamin D3 receptor / 0.898
1db1 VDXVitamin D3 receptor / 0.888
3dr1 C5DVitamin D3 receptor A / 0.886
2o4j VD4Vitamin D3 receptor / 0.884
3vrt YS2Vitamin D3 receptor / 0.881
3m7r VDXVitamin D3 receptor / 0.880
3vt9 YI4Vitamin D3 receptor / 0.878
2hb8 MVDVitamin D3 receptor / 0.875
2ham C33Vitamin D3 receptor / 0.873
3vt7 VDXVitamin D3 receptor / 0.872
3vtc TK3Vitamin D3 receptor / 0.829
4ia7 BIVVitamin D3 receptor A / 0.820
2hbh XE4Vitamin D3 receptor A / 0.808
2hc4 VDXVitamin D3 receptor A / 0.796
1rjk VDZVitamin D3 receptor / 0.774
1txi TX5Vitamin D3 receptor / 0.772
4ite TEYVitamin D3 receptor / 0.772
3vtb TKAVitamin D3 receptor / 0.770
4g2i 0VQVitamin D3 receptor / 0.736
4ia2 BIVVitamin D3 receptor A / 0.702
1rkg VD1Vitamin D3 receptor / 0.699
3w0a DS5Vitamin D3 receptor / 0.684
3vtd TKDVitamin D3 receptor / 0.682
1zhz ERGOxysterol-binding protein homolog 4 / 0.656
5amn DTQProto-oncogene tyrosine-protein kinase receptor Ret 2.7.10.1 0.650